J6_6WOO_001

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAACUUUGGGCC*GGCCUUUCCUUC*GGACUUUU*AAUAGAAUAGGA*UAAUGAUUAAUAG*CAUUA

Length

63 nucleotides

Bulged bases

6WOO|1|2|U|637, 6WOO|1|2|U|638, 6WOO|1|2|U|694, 6WOO|1|2|U|695, 6WOO|1|2|C|696, 6WOO|1|2|C|697, 6WOO|1|2|U|813, 6WOO|1|2|G|815, 6WOO|1|2|A|856, 6WOO|1|2|U|864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|2|U|632
6WOO|1|2|G|633
6WOO|1|2|A|634
6WOO|1|2|A|635
6WOO|1|2|C|636
6WOO|1|2|U|637
6WOO|1|2|U|638
6WOO|1|2|U|639
6WOO|1|2|G|640
6WOO|1|2|G|641
6WOO|1|2|G|642
6WOO|1|2|C|643
6WOO|1|2|C|644
*
6WOO|1|2|G|689
6WOO|1|2|G|690
6WOO|1|2|C|691
6WOO|1|2|C|692
6WOO|1|2|U|693
6WOO|1|2|U|694
6WOO|1|2|U|695
6WOO|1|2|C|696
6WOO|1|2|C|697
6WOO|1|2|U|698
6WOO|1|2|U|699
6WOO|1|2|C|700
*
6WOO|1|2|G|738
6WOO|1|2|G|739
6WOO|1|2|A|740
6WOO|1|2|C|741
6WOO|1|2|U|742
6WOO|1|2|U|743
6WOO|1|2|U|744
6WOO|1|2|U|745
*
6WOO|1|2|A|806
6WOO|1|2|A|807
6WOO|1|2|U|808
6WOO|1|2|A|809
6WOO|1|2|G|810
6WOO|1|2|A|811
6WOO|1|2|A|812
6WOO|1|2|U|813
6WOO|1|2|A|814
6WOO|1|2|G|815
6WOO|1|2|G|816
6WOO|1|2|A|817
*
6WOO|1|2|U|854
6WOO|1|2|A|855
6WOO|1|2|A|856
6WOO|1|2|U|857
6WOO|1|2|G|858
6WOO|1|2|A|859
6WOO|1|2|U|860
6WOO|1|2|U|861
6WOO|1|2|A|862
6WOO|1|2|A|863
6WOO|1|2|U|864
6WOO|1|2|A|865
6WOO|1|2|G|866
*
6WOO|1|2|C|962
6WOO|1|2|A|963
6WOO|1|2|U|964
6WOO|1|2|U|965
6WOO|1|2|A|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain HH

eS7

Chain LL

uS17

Chain NN

uS15

Chain R

eL19

Chain WW

uS8

Chain XX

uS12

Chain bb

eS27