J6_6WOO_002
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 6WOO|1|5|A|67, 6WOO|1|5|U|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|G|22
6WOO|1|5|A|23
6WOO|1|5|G|24
6WOO|1|5|U|25
6WOO|1|5|A|26
6WOO|1|5|C|27
*
6WOO|1|5|G|58
6WOO|1|5|G|59
6WOO|1|5|A|60
6WOO|1|5|A|61
6WOO|1|5|A|62
6WOO|1|5|A|63
6WOO|1|5|G|64
6WOO|1|5|A|65
6WOO|1|5|A|66
6WOO|1|5|A|67
6WOO|1|5|C|68
*
6WOO|1|5|G|75
6WOO|1|5|G|76
6WOO|1|5|A|77
6WOO|1|5|U|78
6WOO|1|5|U|79
*
6WOO|1|5|A|106
6WOO|1|5|A|107
6WOO|1|5|A|108
6WOO|1|5|A|109
6WOO|1|5|G|110
*
6WOO|1|5|C|321
6WOO|1|5|U|322
6WOO|1|5|A|323
6WOO|1|5|A|324
6WOO|1|5|A|325
6WOO|1|5|U|326
6WOO|1|5|A|327
6WOO|1|5|U|328
6WOO|1|5|U|329
6WOO|1|5|G|330
6WOO|1|5|G|331
*
6WOO|1|8|C|32
6WOO|1|8|A|33
6WOO|1|8|U|34
6WOO|1|8|C|35
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal rRNA
Nearby chains
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain h
- uL29
- Chain i
- eL36
- Chain j
- eL37
Coloring options: