J6_6XII_001

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6XII|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XII|1|a|G|45
6XII|1|a|G|46
*
6XII|1|a|C|179
6XII|1|a|G|180
6XII|1|a|A|181
6XII|1|a|A|182
6XII|1|a|C|183
*
6XII|1|a|G|214
6XII|1|a|G|215
6XII|1|a|A|216
6XII|1|a|A|217
6XII|1|a|A|218
6XII|1|a|A|219
6XII|1|a|G|220
6XII|1|a|A|221
6XII|1|a|A|222
6XII|1|a|A|223
6XII|1|a|U|224
*
6XII|1|a|A|231
6XII|1|a|G|232
6XII|1|a|A|233
6XII|1|a|U|234
6XII|1|a|U|235
*
6XII|1|a|A|262
6XII|1|a|G|263
6XII|1|a|C|264
6XII|1|a|A|265
6XII|1|a|G|266
*
6XII|1|a|C|426
6XII|1|a|U|427
6XII|1|a|A|428
6XII|1|a|A|429
6XII|1|a|A|430
6XII|1|a|U|431
6XII|1|a|A|432
6XII|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34