3D structure

PDB id
6XIR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
Length
38 nucleotides
Bulged bases
6XIR|1|1|G|2418, 6XIR|1|1|A|2799, 6XIR|1|1|A|2801, 6XIR|1|1|A|2802
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XIR|1|1|U|2416
6XIR|1|1|U|2417
6XIR|1|1|G|2418
6XIR|1|1|A|2419
*
6XIR|1|1|U|2611
6XIR|1|1|U|2612
6XIR|1|1|U|2613
6XIR|1|1|G|2614
*
6XIR|1|1|C|2627
6XIR|1|1|A|2628
*
6XIR|1|1|U|2650
6XIR|1|1|G|2651
6XIR|1|1|U|2652
6XIR|1|1|C|2653
*
6XIR|1|1|G|2754
6XIR|1|1|C|2755
6XIR|1|1|C|2756
6XIR|1|1|U|2757
6XIR|1|1|A|2758
6XIR|1|1|U|2759
6XIR|1|1|C|2760
6XIR|1|1|G|2761
6XIR|1|1|A|2762
6XIR|1|1|U|2763
6XIR|1|1|C|2764
6XIR|1|1|C|2765
*
6XIR|1|1|G|2793
6XIR|1|1|G|2794
6XIR|1|1|U|2795
6XIR|1|1|G|2796
6XIR|1|1|C|2797
6XIR|1|1|C|2798
6XIR|1|1|A|2799
6XIR|1|1|G|2800
6XIR|1|1|A|2801
6XIR|1|1|A|2802
6XIR|1|1|A|2803
6XIR|1|1|A|2804

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain AX
Transfer RNA; tRNA
Chain N
60S ribosomal protein L15-A
Chain Q
60S ribosomal protein L18-A
Chain T
60S ribosomal protein L21-A
Chain a
60S ribosomal protein L28
Chain b
RPL29 isoform 1
Chain o
60S ribosomal protein L42-A

Coloring options:

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