J6_6XZA_001

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6XZA|1|A2|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZA|1|A2|G|45
6XZA|1|A2|G|46
*
6XZA|1|A2|C|179
6XZA|1|A2|G|180
6XZA|1|A2|A|181
6XZA|1|A2|A|182
6XZA|1|A2|C|183
*
6XZA|1|A2|G|214
6XZA|1|A2|G|215
6XZA|1|A2|A|216
6XZA|1|A2|A|217
6XZA|1|A2|A|218
6XZA|1|A2|A|219
6XZA|1|A2|G|220
6XZA|1|A2|A|221
6XZA|1|A2|A|222
6XZA|1|A2|A|223
6XZA|1|A2|U|224
*
6XZA|1|A2|A|231
6XZA|1|A2|G|232
6XZA|1|A2|A|233
6XZA|1|A2|U|234
6XZA|1|A2|U|235
*
6XZA|1|A2|A|262
6XZA|1|A2|G|263
6XZA|1|A2|C|264
6XZA|1|A2|A|265
6XZA|1|A2|G|266
*
6XZA|1|A2|C|426
6XZA|1|A2|U|427
6XZA|1|A2|A|428
6XZA|1|A2|A|429
6XZA|1|A2|A|430
6XZA|1|A2|U|431
6XZA|1|A2|A|432
6XZA|1|A2|C|433

Current chains

Chain A2

23S rRNA

Nearby chains

Chain c2

50S ribosomal protein L34