J6_6Y7C_001

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAUG*UUCUGGG*UAAAGGAAUUGAC*GUACACA*UUU*AG

Length

37 nucleotides

Bulged bases

6Y7C|1|2|C|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|C|1028
6Y7C|1|2|U|1029
6Y7C|1|2|A|1030
6Y7C|1|2|U|1031
6Y7C|1|2|G|1032
*
6Y7C|1|2|U|1103
6Y7C|1|2|U|1104
6Y7C|1|2|C|1105
6Y7C|1|2|U|1106
6Y7C|1|2|G|1107
6Y7C|1|2|G|1108
6Y7C|1|2|G|1109
*
6Y7C|1|2|U|1136
6Y7C|1|2|A|1137
6Y7C|1|2|A|1138
6Y7C|1|2|A|1139
6Y7C|1|2|G|1140
6Y7C|1|2|G|1141
6Y7C|1|2|A|1142
6Y7C|1|2|A|1143
6Y7C|1|2|U|1144
6Y7C|1|2|U|1145
6Y7C|1|2|G|1146
6Y7C|1|2|A|1147
6Y7C|1|2|C|1148
*
6Y7C|1|2|G|1629
6Y7C|1|2|U|1630
6Y7C|1|2|A|1631
6Y7C|1|2|C|1632
6Y7C|1|2|A|1633
6Y7C|1|2|C|1634
6Y7C|1|2|A|1635
*
6Y7C|1|2|U|1769
6Y7C|1|2|U|1770
6Y7C|1|2|U|1771
*
6Y7C|1|2|A|1791
6Y7C|1|2|G|1792

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain L

40S ribosomal protein S11-A

Chain O

40S ribosomal protein S14-A

Chain W

40S ribosomal protein S22-A

Chain X

40S ribosomal protein S23-A

Chain h

Pre-rRNA-processing protein PNO1

Chain l

Serine/threonine-protein kinase RIO2