Loop J6_7ABZ

3D structure

PDB id: 7ABZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å

Loop

Sequence: GUGCAUGCCGAGG*CUCGUAAAAAGCCGCAAAAAAUAGUCGCAAACGACGAAAACUAC*GCCCUCUCUCC*GAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCG*CGUUAAAACUUAAUCAGGCUAGUU*GCGAAUGUAAAGACUGACUAAGCAUGUAGUACC
Length: 158 nucleotides
Bulged bases: 7ABZ|1|4|C|44, 7ABZ|1|4|A|69, 7ABZ|1|4|G|77, 7ABZ|1|4|A|81, 7ABZ|1|4|A|83, 7ABZ|1|4|U|85, 7ABZ|1|4|A|86, 7ABZ|1|4|U|88, 7ABZ|1|4|C|91, 7ABZ|1|4|A|92, 7ABZ|1|4|A|93, 7ABZ|1|4|A|94, 7ABZ|1|4|A|97, 7ABZ|1|4|C|98, 7ABZ|1|4|U|105, 7ABZ|1|4|A|106, 7ABZ|1|4|C|173, 7ABZ|1|4|G|181, 7ABZ|1|4|U|182, 7ABZ|1|4|C|183, 7ABZ|1|4|A|184, 7ABZ|1|4|A|185, 7ABZ|1|4|A|190, 7ABZ|1|4|A|197, 7ABZ|1|4|U|237, 7ABZ|1|4|A|238, 7ABZ|1|4|A|239, 7ABZ|1|4|U|246, 7ABZ|1|4|A|247, 7ABZ|1|4|G|248, 7ABZ|1|4|A|286, 7ABZ|1|4|G|288, 7ABZ|1|4|U|289, 7ABZ|1|4|A|290, 7ABZ|1|4|A|302
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7ABZ|1|4|G|41
7ABZ|1|4|U|42
7ABZ|1|4|G|43
7ABZ|1|4|C|44
7ABZ|1|4|A|45
7ABZ|1|4|U|46
7ABZ|1|4|G|47
7ABZ|1|4|C|48
7ABZ|1|4|C|49
7ABZ|1|4|G|50
7ABZ|1|4|A|51
7ABZ|1|4|G|52
7ABZ|1|4|G|53
*
7ABZ|1|4|C|64
7ABZ|1|4|U|65
7ABZ|1|4|C|66
7ABZ|1|4|G|67
7ABZ|1|4|U|68
7ABZ|1|4|A|69
7ABZ|1|4|A|70
7ABZ|1|4|A|71
7ABZ|1|4|A|72
7ABZ|1|4|A|73
7ABZ|1|4|G|74
7ABZ|1|4|C|75
7ABZ|1|4|C|76
7ABZ|1|4|G|77
7ABZ|1|4|C|78
7ABZ|1|4|A|79
7ABZ|1|4|A|80
7ABZ|1|4|A|81
7ABZ|1|4|A|82
7ABZ|1|4|A|83
7ABZ|1|4|A|84
7ABZ|1|4|U|85
7ABZ|1|4|A|86
7ABZ|1|4|G|87
7ABZ|1|4|U|88
7ABZ|1|4|C|89
7ABZ|1|4|G|90
7ABZ|1|4|C|91
7ABZ|1|4|A|92
7ABZ|1|4|A|93
7ABZ|1|4|A|94
7ABZ|1|4|C|95
7ABZ|1|4|G|96
7ABZ|1|4|A|97
7ABZ|1|4|C|98
7ABZ|1|4|G|99
7ABZ|1|4|A|100
7ABZ|1|4|A|101
7ABZ|1|4|A|102
7ABZ|1|4|A|103
7ABZ|1|4|C|104
7ABZ|1|4|U|105
7ABZ|1|4|A|106
7ABZ|1|4|C|107
*
7ABZ|1|4|G|136
7ABZ|1|4|C|137
7ABZ|1|4|C|138
7ABZ|1|4|C|139
7ABZ|1|4|U|140
7ABZ|1|4|C|141
7ABZ|1|4|U|142
7ABZ|1|4|C|143
7ABZ|1|4|U|144
7ABZ|1|4|C|145
7ABZ|1|4|C|146
*
7ABZ|1|4|G|170
7ABZ|1|4|A|171
7ABZ|1|4|U|172
7ABZ|1|4|C|173
7ABZ|1|4|A|174
7ABZ|1|4|A|175
7ABZ|1|4|G|176
7ABZ|1|4|A|177
7ABZ|1|4|G|178
7ABZ|1|4|A|179
7ABZ|1|4|G|180
7ABZ|1|4|G|181
7ABZ|1|4|U|182
7ABZ|1|4|C|183
7ABZ|1|4|A|184
7ABZ|1|4|A|185
7ABZ|1|4|A|186
7ABZ|1|4|C|187
7ABZ|1|4|C|188
7ABZ|1|4|C|189
7ABZ|1|4|A|190
7ABZ|1|4|A|191
7ABZ|1|4|A|192
7ABZ|1|4|A|193
7ABZ|1|4|G|194
7ABZ|1|4|A|195
7ABZ|1|4|G|196
7ABZ|1|4|A|197
7ABZ|1|4|U|198
7ABZ|1|4|C|199
7ABZ|1|4|G|200
7ABZ|1|4|C|201
7ABZ|1|4|G|202
*
7ABZ|1|4|C|227
7ABZ|1|4|G|228
7ABZ|1|4|U|229
7ABZ|1|4|U|230
7ABZ|1|4|A|231
7ABZ|1|4|A|232
7ABZ|1|4|A|233
7ABZ|1|4|A|234
7ABZ|1|4|C|235
7ABZ|1|4|U|236
7ABZ|1|4|U|237
7ABZ|1|4|A|238
7ABZ|1|4|A|239
7ABZ|1|4|U|240
7ABZ|1|4|C|241
7ABZ|1|4|A|242
7ABZ|1|4|G|243
7ABZ|1|4|G|244
7ABZ|1|4|C|245
7ABZ|1|4|U|246
7ABZ|1|4|A|247
7ABZ|1|4|G|248
7ABZ|1|4|U|249
7ABZ|1|4|U|250
*
7ABZ|1|4|G|282
7ABZ|1|4|C|283
7ABZ|1|4|G|284
7ABZ|1|4|A|285
7ABZ|1|4|A|286
7ABZ|1|4|U|287
7ABZ|1|4|G|288
7ABZ|1|4|U|289
7ABZ|1|4|A|290
7ABZ|1|4|A|291
7ABZ|1|4|A|292
7ABZ|1|4|G|293
7ABZ|1|4|A|294
7ABZ|1|4|C|295
7ABZ|1|4|U|296
7ABZ|1|4|G|297
7ABZ|1|4|A|298
7ABZ|1|4|C|299
7ABZ|1|4|U|300
7ABZ|1|4|A|301
7ABZ|1|4|A|302
7ABZ|1|4|G|303
7ABZ|1|4|C|304
7ABZ|1|4|A|305
7ABZ|1|4|U|306
7ABZ|1|4|G|307
7ABZ|1|4|U|308
7ABZ|1|4|A|309
7ABZ|1|4|G|310
7ABZ|1|4|U|311
7ABZ|1|4|A|312
7ABZ|1|4|C|313
7ABZ|1|4|C|314

Current chains

Chain 4: transfer-messenger RNA (tmRNA)

Nearby chains

Chain 2: Small subunit ribosomal RNA; SSU rRNA
Chain h: 30S ribosomal protein S3

J6_7ABZ_002