J6_7BT6_002
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUUUCUGCCCAGUGCU*GGUAAACGGCGGGA*UCUCUUAAGGUAGCCA*UGGAUUAAC
- Length
- 67 nucleotides
- Bulged bases
- 7BT6|1|1|U|2193, 7BT6|1|1|G|2194, 7BT6|1|1|C|2197, 7BT6|1|1|G|2199, 7BT6|1|1|U|2200, 7BT6|1|1|A|2242, 7BT6|1|1|A|2243, 7BT6|1|1|A|2244, 7BT6|1|1|C|2265, 7BT6|1|1|U|2269, 7BT6|1|1|G|2272, 7BT6|1|1|G|2273, 7BT6|1|1|U|2274, 7BT6|1|1|A|2275, 7BT6|1|1|G|2316, 7BT6|1|1|U|2318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7BT6|1|1|G|2130
7BT6|1|1|A|2131
7BT6|1|1|C|2132
7BT6|1|1|U|2133
7BT6|1|1|G|2134
*
7BT6|1|1|C|2146
7BT6|1|1|A|2147
7BT6|1|1|U|2148
7BT6|1|1|A|2149
7BT6|1|1|G|2150
*
7BT6|1|1|U|2186
7BT6|1|1|G|2187
7BT6|1|1|A|2188
7BT6|1|1|U|2189
7BT6|1|1|U|2190
7BT6|1|1|U|2191
7BT6|1|1|C|2192
7BT6|1|1|U|2193
7BT6|1|1|G|2194
7BT6|1|1|C|2195
7BT6|1|1|C|2196
7BT6|1|1|C|2197
7BT6|1|1|A|2198
7BT6|1|1|G|2199
7BT6|1|1|U|2200
7BT6|1|1|G|2201
7BT6|1|1|C|2202
7BT6|1|1|U|2203
*
7BT6|1|1|G|2239
7BT6|1|1|G|2240
7BT6|1|1|U|2241
7BT6|1|1|A|2242
7BT6|1|1|A|2243
7BT6|1|1|A|2244
7BT6|1|1|C|2245
7BT6|1|1|G|2246
7BT6|1|1|G|2247
7BT6|1|1|C|2248
7BT6|1|1|G|2249
7BT6|1|1|G|2250
7BT6|1|1|G|2251
7BT6|1|1|A|2252
*
7BT6|1|1|U|2264
7BT6|1|1|C|2265
7BT6|1|1|U|2266
7BT6|1|1|C|2267
7BT6|1|1|U|2268
7BT6|1|1|U|2269
7BT6|1|1|A|2270
7BT6|1|1|A|2271
7BT6|1|1|G|2272
7BT6|1|1|G|2273
7BT6|1|1|U|2274
7BT6|1|1|A|2275
7BT6|1|1|G|2276
7BT6|1|1|C|2277
7BT6|1|1|C|2278
7BT6|1|1|A|2279
*
7BT6|1|1|U|2314
7BT6|1|1|G|2315
7BT6|1|1|G|2316
7BT6|1|1|A|2317
7BT6|1|1|U|2318
7BT6|1|1|U|2319
7BT6|1|1|A|2320
7BT6|1|1|A|2321
7BT6|1|1|C|2322
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain p
- 60S ribosomal protein L43-A
- Chain v
- Ribosome biogenesis protein RPF2
- Chain x
- Ribosome assembly protein 4
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