J6_7D80_002

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

7D80|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|G|45
7D80|1|A|G|46
*
7D80|1|A|C|179
7D80|1|A|G|180
7D80|1|A|A|181
7D80|1|A|A|182
7D80|1|A|C|183
*
7D80|1|A|G|214
7D80|1|A|G|215
7D80|1|A|A|216
7D80|1|A|A|217
7D80|1|A|A|218
7D80|1|A|A|219
7D80|1|A|G|220
7D80|1|A|A|221
7D80|1|A|A|222
7D80|1|A|A|223
7D80|1|A|U|224
*
7D80|1|A|A|231
7D80|1|A|G|232
7D80|1|A|A|233
7D80|1|A|U|234
7D80|1|A|U|235
*
7D80|1|A|A|262
7D80|1|A|G|263
7D80|1|A|C|264
7D80|1|A|A|265
7D80|1|A|G|266
*
7D80|1|A|C|426
7D80|1|A|U|427
7D80|1|A|A|428
7D80|1|A|A|429
7D80|1|A|A|430
7D80|1|A|U|431
7D80|1|A|A|432
7D80|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34