J6_7F0D_001

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GGAAC*GGAGGAGAAAA*UGAUU*AACAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

7F0D|1|A|A|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7F0D|1|A|G|45
7F0D|1|A|C|46
*
7F0D|1|A|G|181
7F0D|1|A|G|182
7F0D|1|A|A|183
7F0D|1|A|A|184
7F0D|1|A|C|185
*
7F0D|1|A|G|216
7F0D|1|A|G|217
7F0D|1|A|A|218
7F0D|1|A|G|219
7F0D|1|A|G|220
7F0D|1|A|A|221
7F0D|1|A|G|222
7F0D|1|A|A|223
7F0D|1|A|A|224
7F0D|1|A|A|225
7F0D|1|A|A|226
*
7F0D|1|A|U|233
7F0D|1|A|G|234
7F0D|1|A|A|235
7F0D|1|A|U|236
7F0D|1|A|U|237
*
7F0D|1|A|A|264
7F0D|1|A|A|265
7F0D|1|A|C|266
7F0D|1|A|A|267
7F0D|1|A|G|268
*
7F0D|1|A|C|515
7F0D|1|A|U|516
7F0D|1|A|A|517
7F0D|1|A|A|518
7F0D|1|A|A|519
7F0D|1|A|U|520
7F0D|1|A|A|521
7F0D|1|A|C|522

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34