Loop J6_7MPI

3D structure

PDB id: 7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 7MPI|1|A1|A|67, 7MPI|1|A1|U|329, 7MPI|1|A4|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7MPI|1|A1|G|22
7MPI|1|A1|A|23
7MPI|1|A1|G|24
7MPI|1|A1|U|25
7MPI|1|A1|A|26
7MPI|1|A1|C|27
*
7MPI|1|A1|G|58
7MPI|1|A1|G|59
7MPI|1|A1|A|60
7MPI|1|A1|A|61
7MPI|1|A1|A|62
7MPI|1|A1|A|63
7MPI|1|A1|G|64
7MPI|1|A1|A|65
7MPI|1|A1|A|66
7MPI|1|A1|A|67
7MPI|1|A1|C|68
*
7MPI|1|A1|G|75
7MPI|1|A1|G|76
7MPI|1|A1|A|77
7MPI|1|A1|U|78
7MPI|1|A1|U|79
*
7MPI|1|A1|A|106
7MPI|1|A1|A|107
7MPI|1|A1|A|108
7MPI|1|A1|A|109
7MPI|1|A1|G|110
*
7MPI|1|A1|C|321
7MPI|1|A1|U|322
7MPI|1|A1|A|323
7MPI|1|A1|A|324
7MPI|1|A1|A|325
7MPI|1|A1|U|326
7MPI|1|A1|A|327
7MPI|1|A1|U|328
7MPI|1|A1|U|329
7MPI|1|A1|G|330
7MPI|1|A1|G|331
*
7MPI|1|A4|C|32
7MPI|1|A4|A|33
7MPI|1|A4|U|34
7MPI|1|A4|C|35

Current chains

Chain A1: 25S rRNA
Chain A4: 5.8 S rRNA

Nearby chains

Chain AC: 60S ribosomal protein L4-A
Chain AL: 60S ribosomal protein L13-A
Chain AN: 60S ribosomal protein L15-A
Chain Ah: 60S ribosomal protein L35-A
Chain Ai: 60S ribosomal protein L36-A
Chain Aj: 60S ribosomal protein L37-A

J6_7MPI_001