J6_7MPI_002
3D structure
- PDB id
- 7MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- U(OMU)GA*UUUG*CA*UGUC*GCCUAUCGAUCC*(OMG)GUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 7MPI|1|A1|G|2418, 7MPI|1|A1|C|2760, 7MPI|1|A1|A|2799, 7MPI|1|A1|A|2801, 7MPI|1|A1|A|2802
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MPI|1|A1|U|2416
7MPI|1|A1|OMU|2417
7MPI|1|A1|G|2418
7MPI|1|A1|A|2419
*
7MPI|1|A1|U|2611
7MPI|1|A1|U|2612
7MPI|1|A1|U|2613
7MPI|1|A1|G|2614
*
7MPI|1|A1|C|2627
7MPI|1|A1|A|2628
*
7MPI|1|A1|U|2650
7MPI|1|A1|G|2651
7MPI|1|A1|U|2652
7MPI|1|A1|C|2653
*
7MPI|1|A1|G|2754
7MPI|1|A1|C|2755
7MPI|1|A1|C|2756
7MPI|1|A1|U|2757
7MPI|1|A1|A|2758
7MPI|1|A1|U|2759
7MPI|1|A1|C|2760
7MPI|1|A1|G|2761
7MPI|1|A1|A|2762
7MPI|1|A1|U|2763
7MPI|1|A1|C|2764
7MPI|1|A1|C|2765
*
7MPI|1|A1|OMG|2793
7MPI|1|A1|G|2794
7MPI|1|A1|U|2795
7MPI|1|A1|G|2796
7MPI|1|A1|C|2797
7MPI|1|A1|C|2798
7MPI|1|A1|A|2799
7MPI|1|A1|G|2800
7MPI|1|A1|A|2801
7MPI|1|A1|A|2802
7MPI|1|A1|A|2803
7MPI|1|A1|A|2804
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- 60S ribosomal protein L29
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: