J6_7NRD_001
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 7NRD|1|LA|A|67, 7NRD|1|LA|U|329, 7NRD|1|LC|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|LA|G|22
7NRD|1|LA|A|23
7NRD|1|LA|G|24
7NRD|1|LA|U|25
7NRD|1|LA|A|26
7NRD|1|LA|C|27
*
7NRD|1|LA|G|58
7NRD|1|LA|G|59
7NRD|1|LA|A|60
7NRD|1|LA|A|61
7NRD|1|LA|A|62
7NRD|1|LA|A|63
7NRD|1|LA|G|64
7NRD|1|LA|A|65
7NRD|1|LA|A|66
7NRD|1|LA|A|67
7NRD|1|LA|C|68
*
7NRD|1|LA|G|75
7NRD|1|LA|G|76
7NRD|1|LA|A|77
7NRD|1|LA|U|78
7NRD|1|LA|U|79
*
7NRD|1|LA|A|106
7NRD|1|LA|A|107
7NRD|1|LA|A|108
7NRD|1|LA|A|109
7NRD|1|LA|G|110
*
7NRD|1|LA|C|321
7NRD|1|LA|U|322
7NRD|1|LA|A|323
7NRD|1|LA|A|324
7NRD|1|LA|A|325
7NRD|1|LA|U|326
7NRD|1|LA|A|327
7NRD|1|LA|U|328
7NRD|1|LA|U|329
7NRD|1|LA|G|330
7NRD|1|LA|G|331
*
7NRD|1|LC|C|32
7NRD|1|LC|A|33
7NRD|1|LC|U|34
7NRD|1|LC|C|35
Current chains
- Chain LA
- 25S rRNA (3184-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lk
- 60S ribosomal protein L36-A
- Chain Ll
- 60S ribosomal protein L37-A
Coloring options: