3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAUGCC*GGUUCCGGGG*UUAAAGGAAUU*ACACCG*CAAGGUUUCCGU*GCGGAAG
Length
53 nucleotides
Bulged bases
7NWG|1|A2|C|1698, 7NWG|1|A2|A|1699, 7NWG|1|A2|C|1701, 7NWG|1|A2|A|1835, 7NWG|1|A2|G|1837, 7NWG|1|A2|U|1838, 7NWG|1|A2|A|1860
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NWG|1|A2|C|1085
7NWG|1|A2|G|1086
7NWG|1|A2|A|1087
7NWG|1|A2|U|1088
7NWG|1|A2|G|1089
7NWG|1|A2|C|1090
7NWG|1|A2|C|1091
*
7NWG|1|A2|G|1158
7NWG|1|A2|G|1159
7NWG|1|A2|U|1160
7NWG|1|A2|U|1161
7NWG|1|A2|C|1162
7NWG|1|A2|C|1163
7NWG|1|A2|G|1164
7NWG|1|A2|G|1165
7NWG|1|A2|G|1166
7NWG|1|A2|G|1167
*
7NWG|1|A2|U|1192
7NWG|1|A2|U|1193
7NWG|1|A2|A|1194
7NWG|1|A2|A|1195
7NWG|1|A2|A|1196
7NWG|1|A2|G|1197
7NWG|1|A2|G|1198
7NWG|1|A2|A|1199
7NWG|1|A2|A|1200
7NWG|1|A2|U|1201
7NWG|1|A2|U|1202
*
7NWG|1|A2|A|1697
7NWG|1|A2|C|1698
7NWG|1|A2|A|1699
7NWG|1|A2|C|1700
7NWG|1|A2|C|1701
7NWG|1|A2|G|1702
*
7NWG|1|A2|C|1833
7NWG|1|A2|A|1834
7NWG|1|A2|A|1835
7NWG|1|A2|G|1836
7NWG|1|A2|G|1837
7NWG|1|A2|U|1838
7NWG|1|A2|U|1839
7NWG|1|A2|U|1840
7NWG|1|A2|C|1841
7NWG|1|A2|C|1842
7NWG|1|A2|G|1843
7NWG|1|A2|U|1844
*
7NWG|1|A2|G|1855
7NWG|1|A2|C|1856
7NWG|1|A2|G|1857
7NWG|1|A2|G|1858
7NWG|1|A2|A|1859
7NWG|1|A2|A|1860
7NWG|1|A2|G|1861

Current chains

Chain A2
18S Ribosomal RNA

Nearby chains

Chain 33
Transfer RNA; tRNA
Chain D2
40S ribosomal protein S2
Chain M2
40S ribosomal protein S11
Chain O2
ribosomal protein uS15
Chain P2
uS11
Chain X2
Ribosomal protein S15a
Chain Y2
Ribosomal protein S23
Chain b2
40S ribosomal protein S26
Chain n3
60s ribosomal protein l41
Chain v3
mRNA

Coloring options:

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