J6_7NWG_001
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUGCC*GGUUCCGGGG*UUAAAGGAAUU*ACACCG*CAAGGUUUCCGU*GCGGAAG
- Length
- 53 nucleotides
- Bulged bases
- 7NWG|1|A2|C|1698, 7NWG|1|A2|A|1699, 7NWG|1|A2|C|1701, 7NWG|1|A2|A|1835, 7NWG|1|A2|G|1837, 7NWG|1|A2|U|1838, 7NWG|1|A2|A|1860
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NWG|1|A2|C|1085
7NWG|1|A2|G|1086
7NWG|1|A2|A|1087
7NWG|1|A2|U|1088
7NWG|1|A2|G|1089
7NWG|1|A2|C|1090
7NWG|1|A2|C|1091
*
7NWG|1|A2|G|1158
7NWG|1|A2|G|1159
7NWG|1|A2|U|1160
7NWG|1|A2|U|1161
7NWG|1|A2|C|1162
7NWG|1|A2|C|1163
7NWG|1|A2|G|1164
7NWG|1|A2|G|1165
7NWG|1|A2|G|1166
7NWG|1|A2|G|1167
*
7NWG|1|A2|U|1192
7NWG|1|A2|U|1193
7NWG|1|A2|A|1194
7NWG|1|A2|A|1195
7NWG|1|A2|A|1196
7NWG|1|A2|G|1197
7NWG|1|A2|G|1198
7NWG|1|A2|A|1199
7NWG|1|A2|A|1200
7NWG|1|A2|U|1201
7NWG|1|A2|U|1202
*
7NWG|1|A2|A|1697
7NWG|1|A2|C|1698
7NWG|1|A2|A|1699
7NWG|1|A2|C|1700
7NWG|1|A2|C|1701
7NWG|1|A2|G|1702
*
7NWG|1|A2|C|1833
7NWG|1|A2|A|1834
7NWG|1|A2|A|1835
7NWG|1|A2|G|1836
7NWG|1|A2|G|1837
7NWG|1|A2|U|1838
7NWG|1|A2|U|1839
7NWG|1|A2|U|1840
7NWG|1|A2|C|1841
7NWG|1|A2|C|1842
7NWG|1|A2|G|1843
7NWG|1|A2|U|1844
*
7NWG|1|A2|G|1855
7NWG|1|A2|C|1856
7NWG|1|A2|G|1857
7NWG|1|A2|G|1858
7NWG|1|A2|A|1859
7NWG|1|A2|A|1860
7NWG|1|A2|G|1861
Current chains
- Chain A2
- 18S Ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain D2
- 40S ribosomal protein S2
- Chain M2
- 40S ribosomal protein S11
- Chain O2
- ribosomal protein uS15
- Chain P2
- uS11
- Chain X2
- Ribosomal protein S15a
- Chain Y2
- Ribosomal protein S23
- Chain b2
- 40S ribosomal protein S26
- Chain n3
- 60s ribosomal protein l41
- Chain v3
- mRNA
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