J6_7O80_002
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 7O80|1|B5|C|1456, 7O80|1|B5|G|1457
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O80|1|B5|C|1296
7O80|1|B5|G|1297
7O80|1|B5|A|1298
7O80|1|B5|G|1299
*
7O80|1|B5|C|1328
7O80|1|B5|G|1329
7O80|1|B5|C|1330
7O80|1|B5|A|1331
7O80|1|B5|A|1332
*
7O80|1|B5|U|1339
7O80|1|B5|G|1340
7O80|1|B5|A|1341
7O80|1|B5|A|1342
7O80|1|B5|G|1343
*
7O80|1|B5|C|1373
7O80|1|B5|G|1374
7O80|1|B5|A|1375
7O80|1|B5|G|1376
*
7O80|1|B5|C|1419
7O80|1|B5|G|1420
7O80|1|B5|G|1421
*
7O80|1|B5|C|1454
7O80|1|B5|A|1455
7O80|1|B5|C|1456
7O80|1|B5|G|1457
7O80|1|B5|A|1458
7O80|1|B5|G|1459
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BL
- Ribosomal protein eL13
- Chain BQ
- Ribosomal protein L18
- Chain BT
- eL21
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
- Chain Bi
- 60S ribosomal protein L36
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