J6_7OHU_001

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

7OHU|1|1|A|67, 7OHU|1|1|A|108, 7OHU|1|1|U|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OHU|1|1|G|22
7OHU|1|1|A|23
7OHU|1|1|G|24
7OHU|1|1|U|25
7OHU|1|1|A|26
7OHU|1|1|C|27
*
7OHU|1|1|G|58
7OHU|1|1|G|59
7OHU|1|1|A|60
7OHU|1|1|A|61
7OHU|1|1|A|62
7OHU|1|1|A|63
7OHU|1|1|G|64
7OHU|1|1|A|65
7OHU|1|1|A|66
7OHU|1|1|A|67
7OHU|1|1|C|68
*
7OHU|1|1|G|75
7OHU|1|1|G|76
7OHU|1|1|A|77
7OHU|1|1|U|78
7OHU|1|1|U|79
*
7OHU|1|1|A|106
7OHU|1|1|A|107
7OHU|1|1|A|108
7OHU|1|1|A|109
7OHU|1|1|G|110
*
7OHU|1|1|C|321
7OHU|1|1|U|322
7OHU|1|1|A|323
7OHU|1|1|A|324
7OHU|1|1|A|325
7OHU|1|1|U|326
7OHU|1|1|A|327
7OHU|1|1|U|328
7OHU|1|1|U|329
7OHU|1|1|G|330
7OHU|1|1|G|331
*
7OHU|1|2|C|32
7OHU|1|2|A|33
7OHU|1|2|U|34
7OHU|1|2|C|35

Current chains

Chain 1

25S rRNA

Chain 2

5.8S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain L

60S ribosomal protein L13-A

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A

Chain i

60S ribosomal protein L36-A

Chain j

60S ribosomal protein L37-A