Loop J6_7OHX

3D structure

PDB id: 7OHX (explore in PDB, NAKB, or RNA 3D Hub)
Description: Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: CGAAGUUUCCCUCAGGAUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length: 43 nucleotides
Bulged bases: 7OHX|1|1|C|961, 7OHX|1|1|U|1144, 7OHX|1|1|A|1159
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7OHX|1|1|C|949
7OHX|1|1|G|950
7OHX|1|1|A|951
7OHX|1|1|A|952
7OHX|1|1|G|953
7OHX|1|1|U|954
7OHX|1|1|U|955
7OHX|1|1|U|956
7OHX|1|1|C|957
7OHX|1|1|C|958
7OHX|1|1|C|959
7OHX|1|1|U|960
7OHX|1|1|C|961
7OHX|1|1|A|962
7OHX|1|1|G|963
7OHX|1|1|G|964
7OHX|1|1|A|965
7OHX|1|1|U|966
7OHX|1|1|A|967
7OHX|1|1|G|968
*
7OHX|1|1|U|1114
7OHX|1|1|G|1115
7OHX|1|1|G|1116
7OHX|1|1|G|1117
*
7OHX|1|1|C|1141
7OHX|1|1|G|1142
7OHX|1|1|A|1143
7OHX|1|1|U|1144
7OHX|1|1|G|1145
7OHX|1|1|C|1146
*
7OHX|1|1|G|1157
7OHX|1|1|A|1158
7OHX|1|1|A|1159
7OHX|1|1|C|1160
7OHX|1|1|G|1161
*
7OHX|1|1|C|1338
7OHX|1|1|C|1339
*
7OHX|1|1|G|1365
7OHX|1|1|A|1366
7OHX|1|1|G|1367
7OHX|1|1|U|1368
7OHX|1|1|A|1369
7OHX|1|1|G|1370

Current chains

Chain 1: 25S rRNA

Nearby chains

Chain C: 60S ribosomal protein L4-A
Chain F: 60S ribosomal protein L7-A
Chain e: 60S ribosomal protein L32
Chain f: 60S ribosomal protein L33-A

J6_7OHX_002