J6_7OHY_001

3D structure

PDB id

7OHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

7OHY|1|1|A|67, 7OHY|1|1|A|108, 7OHY|1|1|U|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OHY|1|1|G|22
7OHY|1|1|A|23
7OHY|1|1|G|24
7OHY|1|1|U|25
7OHY|1|1|A|26
7OHY|1|1|C|27
*
7OHY|1|1|G|58
7OHY|1|1|G|59
7OHY|1|1|A|60
7OHY|1|1|A|61
7OHY|1|1|A|62
7OHY|1|1|A|63
7OHY|1|1|G|64
7OHY|1|1|A|65
7OHY|1|1|A|66
7OHY|1|1|A|67
7OHY|1|1|C|68
*
7OHY|1|1|G|75
7OHY|1|1|G|76
7OHY|1|1|A|77
7OHY|1|1|U|78
7OHY|1|1|U|79
*
7OHY|1|1|A|106
7OHY|1|1|A|107
7OHY|1|1|A|108
7OHY|1|1|A|109
7OHY|1|1|G|110
*
7OHY|1|1|C|321
7OHY|1|1|U|322
7OHY|1|1|A|323
7OHY|1|1|A|324
7OHY|1|1|A|325
7OHY|1|1|U|326
7OHY|1|1|A|327
7OHY|1|1|U|328
7OHY|1|1|U|329
7OHY|1|1|G|330
7OHY|1|1|G|331
*
7OHY|1|2|C|32
7OHY|1|2|A|33
7OHY|1|2|U|34
7OHY|1|2|C|35

Current chains

Chain 1

25S rRNA

Chain 2

5.8S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain L

60S ribosomal protein L13-A

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A