J6_7OIC_002
3D structure
- PDB id
- 7OIC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUCG*CU*AGCA*UCAAUUGAUCC*GACCAACGGAACAA
- Length
- 39 nucleotides
- Bulged bases
- 7OIC|1|A|U|1069, 7OIC|1|A|U|1225, 7OIC|1|A|G|1246, 7OIC|1|A|A|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OIC|1|A|U|1067
7OIC|1|A|U|1068
7OIC|1|A|U|1069
7OIC|1|A|A|1070
*
7OIC|1|A|U|1137
7OIC|1|A|U|1138
7OIC|1|A|C|1139
7OIC|1|A|G|1140
*
7OIC|1|A|C|1152
7OIC|1|A|U|1153
*
7OIC|1|A|A|1175
7OIC|1|A|G|1176
7OIC|1|A|C|1177
7OIC|1|A|A|1178
*
7OIC|1|A|U|1220
7OIC|1|A|C|1221
7OIC|1|A|A|1222
7OIC|1|A|A|1223
7OIC|1|A|U|1224
7OIC|1|A|U|1225
7OIC|1|A|G|1226
7OIC|1|A|A|1227
7OIC|1|A|U|1228
7OIC|1|A|C|1229
7OIC|1|A|C|1230
*
7OIC|1|A|G|1239
7OIC|1|A|A|1240
7OIC|1|A|C|1241
7OIC|1|A|C|1242
7OIC|1|A|A|1243
7OIC|1|A|A|1244
7OIC|1|A|C|1245
7OIC|1|A|G|1246
7OIC|1|A|G|1247
7OIC|1|A|A|1248
7OIC|1|A|A|1249
7OIC|1|A|C|1250
7OIC|1|A|A|1251
7OIC|1|A|A|1252
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 1
- 39S ribosomal protein L33, mitochondrial
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
- Chain x
- 5-methylcytosine rRNA methyltransferase NSUN4
- Chain y
- Transcription termination factor 4, mitochondrial
Coloring options: