3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUUG*CAAAAG*CUAAAUAUUGG*CAUC
Length
44 nucleotides
Bulged bases
7OSM|1|25S|A|67, 7OSM|1|25S|U|329, 7OSM|1|58S|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OSM|1|25S|G|22
7OSM|1|25S|A|23
7OSM|1|25S|G|24
7OSM|1|25S|U|25
7OSM|1|25S|A|26
7OSM|1|25S|C|27
*
7OSM|1|25S|G|58
7OSM|1|25S|G|59
7OSM|1|25S|A|60
7OSM|1|25S|A|61
7OSM|1|25S|A|62
7OSM|1|25S|A|63
7OSM|1|25S|G|64
7OSM|1|25S|A|65
7OSM|1|25S|A|66
7OSM|1|25S|A|67
7OSM|1|25S|C|68
*
7OSM|1|25S|G|75
7OSM|1|25S|G|76
7OSM|1|25S|A|77
7OSM|1|25S|U|78
7OSM|1|25S|U|79
7OSM|1|25S|G|80
*
7OSM|1|25S|C|105
7OSM|1|25S|A|106
7OSM|1|25S|A|107
7OSM|1|25S|A|108
7OSM|1|25S|A|109
7OSM|1|25S|G|110
*
7OSM|1|25S|C|321
7OSM|1|25S|U|322
7OSM|1|25S|A|323
7OSM|1|25S|A|324
7OSM|1|25S|A|325
7OSM|1|25S|U|326
7OSM|1|25S|A|327
7OSM|1|25S|U|328
7OSM|1|25S|U|329
7OSM|1|25S|G|330
7OSM|1|25S|G|331
*
7OSM|1|58S|C|32
7OSM|1|58S|A|33
7OSM|1|58S|U|34
7OSM|1|58S|C|35

Current chains

Chain 25S
25S rRNA
Chain 58S
5.8S rRNA

Nearby chains

Chain eL13
60S ribosomal protein L13
Chain eL15
60S ribosomal protein L15-A
Chain eL36
60S ribosomal protein L36-A
Chain eL37
Ribosomal protein L37
Chain uL29
BJ4_G0044250.mRNA.1.CDS.1
Chain uL4
BJ4_G0008850.mRNA.1.CDS.1

Coloring options:

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