3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
Length
38 nucleotides
Bulged bases
7OSM|1|25S|G|2418, 7OSM|1|25S|C|2760, 7OSM|1|25S|A|2799, 7OSM|1|25S|A|2801, 7OSM|1|25S|A|2802, 7OSM|1|25S|A|2803
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OSM|1|25S|U|2416
7OSM|1|25S|U|2417
7OSM|1|25S|G|2418
7OSM|1|25S|A|2419
*
7OSM|1|25S|U|2611
7OSM|1|25S|U|2612
7OSM|1|25S|U|2613
7OSM|1|25S|G|2614
*
7OSM|1|25S|C|2627
7OSM|1|25S|A|2628
*
7OSM|1|25S|U|2650
7OSM|1|25S|G|2651
7OSM|1|25S|U|2652
7OSM|1|25S|C|2653
*
7OSM|1|25S|G|2754
7OSM|1|25S|C|2755
7OSM|1|25S|C|2756
7OSM|1|25S|U|2757
7OSM|1|25S|A|2758
7OSM|1|25S|U|2759
7OSM|1|25S|C|2760
7OSM|1|25S|G|2761
7OSM|1|25S|A|2762
7OSM|1|25S|U|2763
7OSM|1|25S|C|2764
7OSM|1|25S|C|2765
*
7OSM|1|25S|G|2793
7OSM|1|25S|G|2794
7OSM|1|25S|U|2795
7OSM|1|25S|G|2796
7OSM|1|25S|C|2797
7OSM|1|25S|C|2798
7OSM|1|25S|A|2799
7OSM|1|25S|G|2800
7OSM|1|25S|A|2801
7OSM|1|25S|A|2802
7OSM|1|25S|A|2803
7OSM|1|25S|A|2804

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain PSIT
Transfer RNA; tRNA
Chain eL15
60S ribosomal protein L15-A
Chain eL18
BJ4_G0033900.mRNA.1.CDS.1
Chain eL21
BJ4_G0003770.mRNA.1.CDS.1
Chain eL29
60S ribosomal protein L29
Chain eL42
BJ4_G0001880.mRNA.1.CDS.1
Chain uL15
60S ribosomal protein L28
Chain uL2
60S ribosomal protein L2-B

Coloring options:

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