J6_7OYD_002
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 7OYD|1|5|C|1505, 7OYD|1|5|G|1506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|C|1356
7OYD|1|5|G|1357
7OYD|1|5|A|1358
7OYD|1|5|G|1359
*
7OYD|1|5|C|1388
7OYD|1|5|G|1389
7OYD|1|5|C|1390
7OYD|1|5|A|1391
7OYD|1|5|A|1392
*
7OYD|1|5|U|1399
7OYD|1|5|G|1400
7OYD|1|5|A|1401
7OYD|1|5|A|1402
7OYD|1|5|G|1403
*
7OYD|1|5|C|1422
7OYD|1|5|G|1423
7OYD|1|5|A|1424
7OYD|1|5|G|1425
*
7OYD|1|5|C|1468
7OYD|1|5|G|1469
7OYD|1|5|G|1470
*
7OYD|1|5|C|1503
7OYD|1|5|A|1504
7OYD|1|5|C|1505
7OYD|1|5|G|1506
7OYD|1|5|A|1507
7OYD|1|5|G|1508
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- L13
- Chain Q
- RPL18
- Chain a
- uL15
- Chain b
- 60S ribosomal protein L29
- Chain i
- 60S ribosomal protein L36
Coloring options: