J6_7PIR_001

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GG*CAAUAC*GAAAAGAAAA*UGAUU*ACAG*CUAAAUAC

Length

35 nucleotides

Bulged bases

7PIR|1|3|U|185, 7PIR|1|3|A|227

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PIR|1|3|G|47
7PIR|1|3|G|48
*
7PIR|1|3|C|182
7PIR|1|3|A|183
7PIR|1|3|A|184
7PIR|1|3|U|185
7PIR|1|3|A|186
7PIR|1|3|C|187
*
7PIR|1|3|G|219
7PIR|1|3|A|220
7PIR|1|3|A|221
7PIR|1|3|A|222
7PIR|1|3|A|223
7PIR|1|3|G|224
7PIR|1|3|A|225
7PIR|1|3|A|226
7PIR|1|3|A|227
7PIR|1|3|A|228
*
7PIR|1|3|U|235
7PIR|1|3|G|236
7PIR|1|3|A|237
7PIR|1|3|U|238
7PIR|1|3|U|239
*
7PIR|1|3|A|267
7PIR|1|3|C|268
7PIR|1|3|A|269
7PIR|1|3|G|270
*
7PIR|1|3|C|462
7PIR|1|3|U|463
7PIR|1|3|A|464
7PIR|1|3|A|465
7PIR|1|3|A|466
7PIR|1|3|U|467
7PIR|1|3|A|468
7PIR|1|3|C|469

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34