J6_7PWO_002
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- UUGA*UUCG*CG*C(OMG)UC*GCCUACCGAUCC*GGUGGCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 7PWO|1|1|G|1905, 7PWO|1|1|C|2183, 7PWO|1|1|A|2221, 7PWO|1|1|A|2223, 7PWO|1|1|A|2224
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7PWO|1|1|U|1903
7PWO|1|1|U|1904
7PWO|1|1|G|1905
7PWO|1|1|A|1906
*
7PWO|1|1|U|2034
7PWO|1|1|U|2035
7PWO|1|1|C|2036
7PWO|1|1|G|2037
*
7PWO|1|1|C|2050
7PWO|1|1|G|2051
*
7PWO|1|1|C|2073
7PWO|1|1|OMG|2074
7PWO|1|1|U|2075
7PWO|1|1|C|2076
*
7PWO|1|1|G|2177
7PWO|1|1|C|2178
7PWO|1|1|C|2179
7PWO|1|1|U|2180
7PWO|1|1|A|2181
7PWO|1|1|C|2182
7PWO|1|1|C|2183
7PWO|1|1|G|2184
7PWO|1|1|A|2185
7PWO|1|1|U|2186
7PWO|1|1|C|2187
7PWO|1|1|C|2188
*
7PWO|1|1|G|2215
7PWO|1|1|G|2216
7PWO|1|1|U|2217
7PWO|1|1|G|2218
7PWO|1|1|G|2219
7PWO|1|1|C|2220
7PWO|1|1|A|2221
7PWO|1|1|G|2222
7PWO|1|1|A|2223
7PWO|1|1|A|2224
7PWO|1|1|A|2225
7PWO|1|1|A|2226
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain A2
- Ribosomal protein L2
- Chain N2
- Ribosomal protein L15
- Chain Q2
- Ribosomal protein L18
- Chain T2
- Ribosomal protein L21
- Chain a2
- Ribosomal protein L27a
- Chain b2
- 60S ribosomal protein L29
- Chain o2
- Ribosomal protein L44
- Chain w2
- E-site tRNA
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