J6_7Q08_001

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GACUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

7Q08|1|1|A|66, 7Q08|1|1|U|329, 7Q08|1|4|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Q08|1|1|G|21
7Q08|1|1|A|22
7Q08|1|1|C|23
7Q08|1|1|U|24
7Q08|1|1|A|25
7Q08|1|1|C|26
*
7Q08|1|1|G|57
7Q08|1|1|G|58
7Q08|1|1|A|59
7Q08|1|1|A|60
7Q08|1|1|A|61
7Q08|1|1|A|62
7Q08|1|1|G|63
7Q08|1|1|A|64
7Q08|1|1|A|65
7Q08|1|1|A|66
7Q08|1|1|C|67
*
7Q08|1|1|G|74
7Q08|1|1|G|75
7Q08|1|1|A|76
7Q08|1|1|U|77
7Q08|1|1|U|78
*
7Q08|1|1|A|105
7Q08|1|1|A|106
7Q08|1|1|A|107
7Q08|1|1|A|108
7Q08|1|1|G|109
*
7Q08|1|1|C|321
7Q08|1|1|U|322
7Q08|1|1|A|323
7Q08|1|1|A|324
7Q08|1|1|A|325
7Q08|1|1|U|326
7Q08|1|1|A|327
7Q08|1|1|U|328
7Q08|1|1|U|329
7Q08|1|1|G|330
7Q08|1|1|G|331
*
7Q08|1|4|C|32
7Q08|1|4|A|33
7Q08|1|4|U|34
7Q08|1|4|C|35

Current chains

Chain 1

25S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain AI

Ribosomal 60S subunit protein L35A

Chain AJ

60S ribosomal protein L36

Chain AK

Ribosomal protein L37

Chain l

Ribosomal 60S subunit protein L4B

Chain t

60S ribosomal protein L13

Chain v

Ribosomal protein L15