J6_7Q08_002

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*(OMG)GUGCCAGAAAA

Length

38 nucleotides

Bulged bases

7Q08|1|1|G|2396, 7Q08|1|1|C|2732, 7Q08|1|1|A|2771, 7Q08|1|1|A|2773, 7Q08|1|1|A|2774

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Q08|1|1|U|2394
7Q08|1|1|U|2395
7Q08|1|1|G|2396
7Q08|1|1|A|2397
*
7Q08|1|1|U|2583
7Q08|1|1|U|2584
7Q08|1|1|U|2585
7Q08|1|1|G|2586
*
7Q08|1|1|C|2599
7Q08|1|1|A|2600
*
7Q08|1|1|U|2622
7Q08|1|1|G|2623
7Q08|1|1|U|2624
7Q08|1|1|C|2625
*
7Q08|1|1|G|2726
7Q08|1|1|C|2727
7Q08|1|1|C|2728
7Q08|1|1|U|2729
7Q08|1|1|A|2730
7Q08|1|1|U|2731
7Q08|1|1|C|2732
7Q08|1|1|G|2733
7Q08|1|1|A|2734
7Q08|1|1|U|2735
7Q08|1|1|C|2736
7Q08|1|1|C|2737
*
7Q08|1|1|OMG|2765
7Q08|1|1|G|2766
7Q08|1|1|U|2767
7Q08|1|1|G|2768
7Q08|1|1|C|2769
7Q08|1|1|C|2770
7Q08|1|1|A|2771
7Q08|1|1|G|2772
7Q08|1|1|A|2773
7Q08|1|1|A|2774
7Q08|1|1|A|2775
7Q08|1|1|A|2776

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Ribosomal 60S subunit protein L21A

Chain AB

Ribosomal 60S subunit protein L28

Chain AC

60S ribosomal protein L29

Chain AP

Ribosomal 60S subunit protein L42A

Chain j

Ribosomal 60S subunit protein L2A

Chain v

Ribosomal protein L15

Chain y

Ribosomal 60S subunit protein L18A