J6_7QIW_001

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAUUAC*GGAAAAGAAAC*GGAUU*AACAG*CUAAAUACUGG*CAUC

Length

42 nucleotides

Bulged bases

7QIW|1|2|A|65, 7QIW|1|2|U|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|G|20
7QIW|1|2|A|21
7QIW|1|2|U|22
7QIW|1|2|U|23
7QIW|1|2|A|24
7QIW|1|2|C|25
*
7QIW|1|2|G|56
7QIW|1|2|G|57
7QIW|1|2|A|58
7QIW|1|2|A|59
7QIW|1|2|A|60
7QIW|1|2|A|61
7QIW|1|2|G|62
7QIW|1|2|A|63
7QIW|1|2|A|64
7QIW|1|2|A|65
7QIW|1|2|C|66
*
7QIW|1|2|G|73
7QIW|1|2|G|74
7QIW|1|2|A|75
7QIW|1|2|U|76
7QIW|1|2|U|77
*
7QIW|1|2|A|104
7QIW|1|2|A|105
7QIW|1|2|C|106
7QIW|1|2|A|107
7QIW|1|2|G|108
*
7QIW|1|2|C|318
7QIW|1|2|U|319
7QIW|1|2|A|320
7QIW|1|2|A|321
7QIW|1|2|A|322
7QIW|1|2|U|323
7QIW|1|2|A|324
7QIW|1|2|C|325
7QIW|1|2|U|326
7QIW|1|2|G|327
7QIW|1|2|G|328
*
7QIW|1|8|C|37
7QIW|1|8|A|38
7QIW|1|8|U|39
7QIW|1|8|C|40

Current chains

Chain 2

25S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain N

60S ribosomal protein L13

Chain P

Ribosomal protein L15

Chain j

Similar to 60S ribosomal protein L35

Chain k

60S ribosomal protein L36

Chain l

Ribosomal protein L37