J6_7QIW_002
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- (PSU)UGA*UU(PSU)G*CA*(OMU)(OMG)UC*GCCUAACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 7QIW|1|2|G|2421, 7QIW|1|2|C|2764, 7QIW|1|2|A|2803, 7QIW|1|2|A|2805, 7QIW|1|2|A|2806
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QIW|1|2|PSU|2419
7QIW|1|2|U|2420
7QIW|1|2|G|2421
7QIW|1|2|A|2422
*
7QIW|1|2|U|2615
7QIW|1|2|U|2616
7QIW|1|2|PSU|2617
7QIW|1|2|G|2618
*
7QIW|1|2|C|2631
7QIW|1|2|A|2632
*
7QIW|1|2|OMU|2654
7QIW|1|2|OMG|2655
7QIW|1|2|U|2656
7QIW|1|2|C|2657
*
7QIW|1|2|G|2758
7QIW|1|2|C|2759
7QIW|1|2|C|2760
7QIW|1|2|U|2761
7QIW|1|2|A|2762
7QIW|1|2|A|2763
7QIW|1|2|C|2764
7QIW|1|2|G|2765
7QIW|1|2|A|2766
7QIW|1|2|U|2767
7QIW|1|2|C|2768
7QIW|1|2|C|2769
*
7QIW|1|2|OMG|2797
7QIW|1|2|G|2798
7QIW|1|2|U|2799
7QIW|1|2|G|2800
7QIW|1|2|U|2801
7QIW|1|2|C|2802
7QIW|1|2|A|2803
7QIW|1|2|G|2804
7QIW|1|2|A|2805
7QIW|1|2|A|2806
7QIW|1|2|A|2807
7QIW|1|2|A|2808
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain P
- Ribosomal protein L15
- Chain S
- Ribosomal_L18e/L15P domain-containing protein
- Chain V
- 60S ribosomal protein eL21
- Chain c
- Putative 60S ribosomal protein L27a-3-like
- Chain d
- 60S ribosomal protein L29
- Chain p
- 60S ribosomal protein eL42
- Chain s
- tRNA
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