J6_7QIZ_001

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAUUAC*GGAAAAGAAAC*GGAUU*AACAG*CUAAAUACUGG*CAUC

Length

42 nucleotides

Bulged bases

7QIZ|1|2|A|65, 7QIZ|1|2|U|326, 7QIZ|1|8|U|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|G|20
7QIZ|1|2|A|21
7QIZ|1|2|U|22
7QIZ|1|2|U|23
7QIZ|1|2|A|24
7QIZ|1|2|C|25
*
7QIZ|1|2|G|56
7QIZ|1|2|G|57
7QIZ|1|2|A|58
7QIZ|1|2|A|59
7QIZ|1|2|A|60
7QIZ|1|2|A|61
7QIZ|1|2|G|62
7QIZ|1|2|A|63
7QIZ|1|2|A|64
7QIZ|1|2|A|65
7QIZ|1|2|C|66
*
7QIZ|1|2|G|73
7QIZ|1|2|G|74
7QIZ|1|2|A|75
7QIZ|1|2|U|76
7QIZ|1|2|U|77
*
7QIZ|1|2|A|104
7QIZ|1|2|A|105
7QIZ|1|2|C|106
7QIZ|1|2|A|107
7QIZ|1|2|G|108
*
7QIZ|1|2|C|318
7QIZ|1|2|U|319
7QIZ|1|2|A|320
7QIZ|1|2|A|321
7QIZ|1|2|A|322
7QIZ|1|2|U|323
7QIZ|1|2|A|324
7QIZ|1|2|C|325
7QIZ|1|2|U|326
7QIZ|1|2|G|327
7QIZ|1|2|G|328
*
7QIZ|1|8|C|37
7QIZ|1|8|A|38
7QIZ|1|8|U|39
7QIZ|1|8|C|40

Current chains

Chain 2

25S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain N

60S ribosomal protein L13

Chain P

Ribosomal protein L15

Chain j

Similar to 60S ribosomal protein L35

Chain k

60S ribosomal protein L36

Chain l

Ribosomal protein L37