J6_7QVP_001
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC
- Length
- 38 nucleotides
- Bulged bases
- 7QVP|1|L1|U|34, 7QVP|1|L6|A|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QVP|1|L1|G|33
7QVP|1|L1|U|34
7QVP|1|L1|C|35
*
7QVP|1|L6|G|21
7QVP|1|L6|G|22
7QVP|1|L6|C|23
7QVP|1|L6|G|24
7QVP|1|L6|A|25
7QVP|1|L6|C|26
*
7QVP|1|L6|G|57
7QVP|1|L6|G|58
7QVP|1|L6|A|59
7QVP|1|L6|G|60
7QVP|1|L6|A|61
7QVP|1|L6|A|62
7QVP|1|L6|G|63
7QVP|1|L6|A|64
7QVP|1|L6|A|65
7QVP|1|L6|A|66
7QVP|1|L6|C|67
*
7QVP|1|L6|G|74
7QVP|1|L6|G|75
7QVP|1|L6|A|76
7QVP|1|L6|U|77
7QVP|1|L6|U|78
*
7QVP|1|L6|A|105
7QVP|1|L6|A|106
7QVP|1|L6|G|107
7QVP|1|L6|A|108
7QVP|1|L6|G|109
*
7QVP|1|L6|C|332
7QVP|1|L6|U|333
7QVP|1|L6|A|334
7QVP|1|L6|A|335
7QVP|1|L6|A|336
7QVP|1|L6|U|337
7QVP|1|L6|A|338
7QVP|1|L6|C|339
Current chains
- Chain L1
- 5.8S ribosomal RNA
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain ML
- 60S ribosomal protein L13
- Chain MN
- 60S ribosomal protein L15
- Chain Mh
- 60S ribosomal protein L35
- Chain Mi
- 60S ribosomal protein L36
- Chain Mj
- Ribosomal protein L37
Coloring options: