J6_7UPH_001

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

7UPH|1|I|A|1723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UPH|1|I|G|1545
7UPH|1|I|G|1546
*
7UPH|1|I|C|1679
7UPH|1|I|G|1680
7UPH|1|I|A|1681
7UPH|1|I|A|1682
7UPH|1|I|C|1683
7UPH|1|I|C|1684
*
7UPH|1|I|G|1712
7UPH|1|I|A|1713
7UPH|1|I|G|1714
7UPH|1|I|G|1715
7UPH|1|I|A|1716
7UPH|1|I|A|1717
7UPH|1|I|A|1718
7UPH|1|I|A|1719
7UPH|1|I|G|1720
7UPH|1|I|A|1721
7UPH|1|I|A|1722
7UPH|1|I|A|1723
7UPH|1|I|U|1724
*
7UPH|1|I|A|1731
7UPH|1|I|G|1732
7UPH|1|I|A|1733
7UPH|1|I|U|1734
7UPH|1|I|U|1735
*
7UPH|1|I|A|1762
7UPH|1|I|G|1763
7UPH|1|I|C|1764
7UPH|1|I|A|1765
7UPH|1|I|G|1766
*
7UPH|1|I|C|1926
7UPH|1|I|U|1927
7UPH|1|I|A|1928
7UPH|1|I|A|1929
7UPH|1|I|A|1930
7UPH|1|I|U|1931
7UPH|1|I|A|1932
7UPH|1|I|C|1933

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain k

50S ribosomal protein L34