J6_7XNY_001
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 7XNY|1|L1|A|66, 7XNY|1|L3|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7XNY|1|L1|G|21
7XNY|1|L1|G|22
7XNY|1|L1|C|23
7XNY|1|L1|G|24
7XNY|1|L1|A|25
7XNY|1|L1|C|26
*
7XNY|1|L1|G|57
7XNY|1|L1|G|58
7XNY|1|L1|A|59
7XNY|1|L1|G|60
7XNY|1|L1|A|61
7XNY|1|L1|A|62
7XNY|1|L1|G|63
7XNY|1|L1|A|64
7XNY|1|L1|A|65
7XNY|1|L1|A|66
7XNY|1|L1|C|67
*
7XNY|1|L1|G|74
7XNY|1|L1|G|75
7XNY|1|L1|A|76
7XNY|1|L1|U|77
7XNY|1|L1|U|78
*
7XNY|1|L1|A|105
7XNY|1|L1|A|106
7XNY|1|L1|G|107
7XNY|1|L1|A|108
7XNY|1|L1|G|109
*
7XNY|1|L1|C|332
7XNY|1|L1|U|333
7XNY|1|L1|A|334
7XNY|1|L1|A|335
7XNY|1|L1|A|336
7XNY|1|L1|U|337
7XNY|1|L1|A|338
7XNY|1|L1|C|339
*
7XNY|1|L3|G|33
7XNY|1|L3|U|34
7XNY|1|L3|C|35
Current chains
- Chain L1
- 28S rRNA
- Chain L3
- 5.8S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain Lh
- 60S ribosomal protein L35
- Chain Li
- 60S ribosomal protein L36
- Chain Lj
- 60S ribosomal protein L37
Coloring options: