J6_7XNY_002

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

7XNY|1|L1|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|1352
7XNY|1|L1|G|1353
7XNY|1|L1|A|1354
7XNY|1|L1|G|1355
*
7XNY|1|L1|C|1384
7XNY|1|L1|G|1385
7XNY|1|L1|C|1386
7XNY|1|L1|A|1387
7XNY|1|L1|A|1388
*
7XNY|1|L1|U|1395
7XNY|1|L1|G|1396
7XNY|1|L1|A|1397
7XNY|1|L1|A|1398
7XNY|1|L1|G|1399
*
7XNY|1|L1|C|1418
7XNY|1|L1|G|1419
7XNY|1|L1|A|1420
7XNY|1|L1|G|1421
*
7XNY|1|L1|C|1464
7XNY|1|L1|G|1465
7XNY|1|L1|G|1466
*
7XNY|1|L1|C|1499
7XNY|1|L1|A|1500
7XNY|1|L1|C|1501
7XNY|1|L1|G|1502
7XNY|1|L1|A|1503
7XNY|1|L1|G|1504

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29

Chain Li

60S ribosomal protein L36