J6_7ZPQ_001

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAUC*GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG

Length

42 nucleotides

Bulged bases

7ZPQ|1|3|U|34, 7ZPQ|1|5|A|67, 7ZPQ|1|5|U|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZPQ|1|3|C|32
7ZPQ|1|3|A|33
7ZPQ|1|3|U|34
7ZPQ|1|3|C|35
*
7ZPQ|1|5|G|22
7ZPQ|1|5|A|23
7ZPQ|1|5|G|24
7ZPQ|1|5|U|25
7ZPQ|1|5|A|26
7ZPQ|1|5|C|27
*
7ZPQ|1|5|G|58
7ZPQ|1|5|G|59
7ZPQ|1|5|A|60
7ZPQ|1|5|A|61
7ZPQ|1|5|A|62
7ZPQ|1|5|A|63
7ZPQ|1|5|G|64
7ZPQ|1|5|A|65
7ZPQ|1|5|A|66
7ZPQ|1|5|A|67
7ZPQ|1|5|C|68
*
7ZPQ|1|5|G|75
7ZPQ|1|5|G|76
7ZPQ|1|5|A|77
7ZPQ|1|5|U|78
7ZPQ|1|5|U|79
*
7ZPQ|1|5|A|106
7ZPQ|1|5|A|107
7ZPQ|1|5|A|108
7ZPQ|1|5|A|109
7ZPQ|1|5|G|110
*
7ZPQ|1|5|C|321
7ZPQ|1|5|U|322
7ZPQ|1|5|A|323
7ZPQ|1|5|A|324
7ZPQ|1|5|A|325
7ZPQ|1|5|U|326
7ZPQ|1|5|A|327
7ZPQ|1|5|U|328
7ZPQ|1|5|U|329
7ZPQ|1|5|G|330
7ZPQ|1|5|G|331

Current chains

Chain 3

5.8S ribosomal RNA

Chain 5

25S ribosomal RNA

Nearby chains

Chain BC

RPL4A isoform 1

Chain BK

60S ribosomal protein L13-A

Chain BM

60S ribosomal protein L15-A

Chain Bg

60S ribosomal protein L35-A

Chain Bh

60S ribosomal protein L36-A

Chain Bi

60S ribosomal protein L37-A