J6_7ZPQ_002
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 7ZPQ|1|5|G|2418, 7ZPQ|1|5|C|2760, 7ZPQ|1|5|A|2799, 7ZPQ|1|5|A|2801, 7ZPQ|1|5|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZPQ|1|5|U|2416
7ZPQ|1|5|U|2417
7ZPQ|1|5|G|2418
7ZPQ|1|5|A|2419
*
7ZPQ|1|5|U|2611
7ZPQ|1|5|U|2612
7ZPQ|1|5|U|2613
7ZPQ|1|5|G|2614
*
7ZPQ|1|5|C|2627
7ZPQ|1|5|A|2628
*
7ZPQ|1|5|U|2650
7ZPQ|1|5|G|2651
7ZPQ|1|5|U|2652
7ZPQ|1|5|C|2653
*
7ZPQ|1|5|G|2754
7ZPQ|1|5|C|2755
7ZPQ|1|5|C|2756
7ZPQ|1|5|U|2757
7ZPQ|1|5|A|2758
7ZPQ|1|5|U|2759
7ZPQ|1|5|C|2760
7ZPQ|1|5|G|2761
7ZPQ|1|5|A|2762
7ZPQ|1|5|U|2763
7ZPQ|1|5|C|2764
7ZPQ|1|5|C|2765
*
7ZPQ|1|5|G|2793
7ZPQ|1|5|G|2794
7ZPQ|1|5|U|2795
7ZPQ|1|5|G|2796
7ZPQ|1|5|C|2797
7ZPQ|1|5|C|2798
7ZPQ|1|5|A|2799
7ZPQ|1|5|G|2800
7ZPQ|1|5|A|2801
7ZPQ|1|5|A|2802
7ZPQ|1|5|A|2803
7ZPQ|1|5|A|2804
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein L2-A
- Chain BM
- 60S ribosomal protein L15-A
- Chain BP
- 60S ribosomal protein L18-A
- Chain BS
- 60S ribosomal protein L21-A
- Chain BZ
- 60S ribosomal protein L28
- Chain Ba
- 60S ribosomal protein L29
- Chain Bn
- 60S ribosomal protein L42-A
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