J6_8A5I_001
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GC*GCAGAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC
- Length
- 37 nucleotides
- Bulged bases
- 8A5I|1|A|G|183, 8A5I|1|A|A|225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8A5I|1|A|G|45
8A5I|1|A|C|46
*
8A5I|1|A|G|180
8A5I|1|A|C|181
8A5I|1|A|A|182
8A5I|1|A|G|183
8A5I|1|A|A|184
8A5I|1|A|C|185
*
8A5I|1|A|G|216
8A5I|1|A|G|217
8A5I|1|A|A|218
8A5I|1|A|A|219
8A5I|1|A|G|220
8A5I|1|A|A|221
8A5I|1|A|G|222
8A5I|1|A|A|223
8A5I|1|A|A|224
8A5I|1|A|A|225
8A5I|1|A|G|226
*
8A5I|1|A|C|233
8A5I|1|A|G|234
8A5I|1|A|A|235
8A5I|1|A|U|236
8A5I|1|A|U|237
*
8A5I|1|A|A|264
8A5I|1|A|A|265
8A5I|1|A|G|266
8A5I|1|A|A|267
8A5I|1|A|G|268
*
8A5I|1|A|C|472
8A5I|1|A|U|473
8A5I|1|A|A|474
8A5I|1|A|A|475
8A5I|1|A|A|476
8A5I|1|A|U|477
8A5I|1|A|A|478
8A5I|1|A|C|479
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain I
- 50S ribosomal protein L4
Coloring options: