3D structure

PDB id
8AGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state E
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length
42 nucleotides
Bulged bases
8AGU|1|f|A|67, 8AGU|1|f|U|329, 8AGU|1|i|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8AGU|1|f|G|22
8AGU|1|f|A|23
8AGU|1|f|G|24
8AGU|1|f|U|25
8AGU|1|f|A|26
8AGU|1|f|C|27
*
8AGU|1|f|G|58
8AGU|1|f|G|59
8AGU|1|f|A|60
8AGU|1|f|A|61
8AGU|1|f|A|62
8AGU|1|f|A|63
8AGU|1|f|G|64
8AGU|1|f|A|65
8AGU|1|f|A|66
8AGU|1|f|A|67
8AGU|1|f|C|68
*
8AGU|1|f|G|75
8AGU|1|f|G|76
8AGU|1|f|A|77
8AGU|1|f|U|78
8AGU|1|f|U|79
*
8AGU|1|f|A|106
8AGU|1|f|A|107
8AGU|1|f|A|108
8AGU|1|f|A|109
8AGU|1|f|G|110
*
8AGU|1|f|C|321
8AGU|1|f|U|322
8AGU|1|f|A|323
8AGU|1|f|A|324
8AGU|1|f|A|325
8AGU|1|f|U|326
8AGU|1|f|A|327
8AGU|1|f|U|328
8AGU|1|f|U|329
8AGU|1|f|G|330
8AGU|1|f|G|331
*
8AGU|1|i|C|32
8AGU|1|i|A|33
8AGU|1|i|U|34
8AGU|1|i|C|35

Current chains

Chain f
25S rRNA
Chain i
5.8S rRNA

Nearby chains

Chain A
60S ribosomal protein L15-A
Chain U
60S ribosomal protein L35-A
Chain V
60S ribosomal protein L36-A
Chain W
60S ribosomal protein L37-A
Chain l
BJ4_G0008850.mRNA.1.CDS.1
Chain t
60S ribosomal protein L13-A

Coloring options:

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