J6_8B2L_001
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GACUAC*GGAAAAGAAAC*GGAUU*AACAG*CUAAAUACGGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8B2L|1|A3|A|65, 8B2L|1|A3|G|326, 8B2L|1|B3|U|37
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|G|20
8B2L|1|A3|A|21
8B2L|1|A3|C|22
8B2L|1|A3|U|23
8B2L|1|A3|A|24
8B2L|1|A3|C|25
*
8B2L|1|A3|G|56
8B2L|1|A3|G|57
8B2L|1|A3|A|58
8B2L|1|A3|A|59
8B2L|1|A3|A|60
8B2L|1|A3|A|61
8B2L|1|A3|G|62
8B2L|1|A3|A|63
8B2L|1|A3|A|64
8B2L|1|A3|A|65
8B2L|1|A3|C|66
*
8B2L|1|A3|G|73
8B2L|1|A3|G|74
8B2L|1|A3|A|75
8B2L|1|A3|U|76
8B2L|1|A3|U|77
*
8B2L|1|A3|A|104
8B2L|1|A3|A|105
8B2L|1|A3|C|106
8B2L|1|A3|A|107
8B2L|1|A3|G|108
*
8B2L|1|A3|C|318
8B2L|1|A3|U|319
8B2L|1|A3|A|320
8B2L|1|A3|A|321
8B2L|1|A3|A|322
8B2L|1|A3|U|323
8B2L|1|A3|A|324
8B2L|1|A3|C|325
8B2L|1|A3|G|326
8B2L|1|A3|G|327
8B2L|1|A3|G|328
*
8B2L|1|B3|C|35
8B2L|1|B3|A|36
8B2L|1|B3|U|37
8B2L|1|B3|C|38
Current chains
- Chain A3
- 25S rRNA
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain D3
- 60S ribosomal protein L13
- Chain F3
- Ribosomal protein L15
- Chain U3
- eL36 (60S ribosomal protein L36)
- Chain V3
- Ribosomal protein L37
- Chain n3
- 60S ribosomal protein L35-like
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: