J6_8B2L_002
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(UY1)(OMG)UC*GCCUAACGAUCC*(OMG)GUGUCAG(A2M)AAA
- Length
- 38 nucleotides
- Bulged bases
- 8B2L|1|A3|G|2421, 8B2L|1|A3|C|2763, 8B2L|1|A3|A|2802, 8B2L|1|A3|A2M|2804, 8B2L|1|A3|A|2805
- QA status
- Modified nucleotides: PSU, UY1, OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|PSU|2419
8B2L|1|A3|U|2420
8B2L|1|A3|G|2421
8B2L|1|A3|A|2422
*
8B2L|1|A3|U|2614
8B2L|1|A3|U|2615
8B2L|1|A3|U|2616
8B2L|1|A3|G|2617
*
8B2L|1|A3|C|2630
8B2L|1|A3|A|2631
*
8B2L|1|A3|UY1|2653
8B2L|1|A3|OMG|2654
8B2L|1|A3|U|2655
8B2L|1|A3|C|2656
*
8B2L|1|A3|G|2757
8B2L|1|A3|C|2758
8B2L|1|A3|C|2759
8B2L|1|A3|U|2760
8B2L|1|A3|A|2761
8B2L|1|A3|A|2762
8B2L|1|A3|C|2763
8B2L|1|A3|G|2764
8B2L|1|A3|A|2765
8B2L|1|A3|U|2766
8B2L|1|A3|C|2767
8B2L|1|A3|C|2768
*
8B2L|1|A3|OMG|2796
8B2L|1|A3|G|2797
8B2L|1|A3|U|2798
8B2L|1|A3|G|2799
8B2L|1|A3|U|2800
8B2L|1|A3|C|2801
8B2L|1|A3|A|2802
8B2L|1|A3|G|2803
8B2L|1|A3|A2M|2804
8B2L|1|A3|A|2805
8B2L|1|A3|A|2806
8B2L|1|A3|A|2807
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain F3
- Ribosomal protein L15
- Chain G3
- 60S ribosomal protein L18-2-like
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain O3
- 60S ribosomal protein L29
- Chain W2
- Transfer RNA; tRNA
- Chain Z3
- 60S ribosomal protein L44
- Chain f3
- uL15 (60S ribosomal protein L27a)
- Chain o3
- uL2 (60S ribosomal protein L8)
Coloring options: