J6_8B5L_002
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 8B5L|1|5|C|1456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|C|1296
8B5L|1|5|G|1297
8B5L|1|5|A|1298
8B5L|1|5|G|1299
*
8B5L|1|5|C|1328
8B5L|1|5|G|1329
8B5L|1|5|C|1330
8B5L|1|5|A|1331
8B5L|1|5|A|1332
*
8B5L|1|5|U|1339
8B5L|1|5|G|1340
8B5L|1|5|A|1341
8B5L|1|5|A|1342
8B5L|1|5|G|1343
*
8B5L|1|5|C|1373
8B5L|1|5|G|1374
8B5L|1|5|A|1375
8B5L|1|5|G|1376
*
8B5L|1|5|C|1419
8B5L|1|5|G|1420
8B5L|1|5|G|1421
*
8B5L|1|5|C|1454
8B5L|1|5|A|1455
8B5L|1|5|C|1456
8B5L|1|5|G|1457
8B5L|1|5|A|1458
8B5L|1|5|G|1459
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain Q
- Ribosomal protein L18
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain i
- 60S ribosomal protein L36
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