J6_8BHF_001
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 8BHF|1|A2|A|66, 8BHF|1|C2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A2|G|21
8BHF|1|A2|G|22
8BHF|1|A2|C|23
8BHF|1|A2|G|24
8BHF|1|A2|A|25
8BHF|1|A2|C|26
*
8BHF|1|A2|G|57
8BHF|1|A2|G|58
8BHF|1|A2|A|59
8BHF|1|A2|A|60
8BHF|1|A2|A|61
8BHF|1|A2|A|62
8BHF|1|A2|G|63
8BHF|1|A2|A|64
8BHF|1|A2|A|65
8BHF|1|A2|A|66
8BHF|1|A2|C|67
*
8BHF|1|A2|G|74
8BHF|1|A2|G|75
8BHF|1|A2|A|76
8BHF|1|A2|U|77
8BHF|1|A2|U|78
*
8BHF|1|A2|A|105
8BHF|1|A2|A|106
8BHF|1|A2|G|107
8BHF|1|A2|A|108
8BHF|1|A2|G|109
*
8BHF|1|A2|C|332
8BHF|1|A2|U|333
8BHF|1|A2|A|334
8BHF|1|A2|A|335
8BHF|1|A2|A|336
8BHF|1|A2|U|337
8BHF|1|A2|A|338
8BHF|1|A2|C|339
*
8BHF|1|C2|G|33
8BHF|1|C2|U|34
8BHF|1|C2|C|35
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain C2
- 5.8S ribosomal RNA
Nearby chains
- Chain A1
- Ribosomal protein L15
- Chain U1
- 60S ribosomal protein L35
- Chain V1
- 60S ribosomal protein L36
- Chain W1
- Ribosomal protein L37
- Chain t3
- 60S ribosomal protein L13
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