J6_8BHF_002
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 8BHF|1|A2|C|1501, 8BHF|1|A2|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A2|C|1350
8BHF|1|A2|G|1351
8BHF|1|A2|A|1352
8BHF|1|A2|G|1353
*
8BHF|1|A2|C|1382
8BHF|1|A2|G|1383
8BHF|1|A2|C|1384
8BHF|1|A2|A|1385
8BHF|1|A2|A|1386
*
8BHF|1|A2|U|1393
8BHF|1|A2|G|1394
8BHF|1|A2|A|1395
8BHF|1|A2|A|1396
8BHF|1|A2|G|1397
*
8BHF|1|A2|C|1418
8BHF|1|A2|G|1419
8BHF|1|A2|A|1420
8BHF|1|A2|G|1421
*
8BHF|1|A2|C|1464
8BHF|1|A2|G|1465
8BHF|1|A2|G|1466
*
8BHF|1|A2|C|1499
8BHF|1|A2|A|1500
8BHF|1|A2|C|1501
8BHF|1|A2|G|1502
8BHF|1|A2|A|1503
8BHF|1|A2|G|1504
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain D1
- Ribosomal protein L18
- Chain N1
- 60S ribosomal protein L27a
- Chain O1
- 60S ribosomal protein L29
- Chain V1
- 60S ribosomal protein L36
- Chain l3
- 60S ribosomal protein L4
- Chain t3
- 60S ribosomal protein L13
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