3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length
42 nucleotides
Bulged bases
8BQD|1|BQ|A|67, 8BQD|1|BQ|U|329, 8BQD|1|BS|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BQD|1|BQ|G|22
8BQD|1|BQ|A|23
8BQD|1|BQ|G|24
8BQD|1|BQ|U|25
8BQD|1|BQ|A|26
8BQD|1|BQ|C|27
*
8BQD|1|BQ|G|58
8BQD|1|BQ|G|59
8BQD|1|BQ|A|60
8BQD|1|BQ|A|61
8BQD|1|BQ|A|62
8BQD|1|BQ|A|63
8BQD|1|BQ|G|64
8BQD|1|BQ|A|65
8BQD|1|BQ|A|66
8BQD|1|BQ|A|67
8BQD|1|BQ|C|68
*
8BQD|1|BQ|G|75
8BQD|1|BQ|G|76
8BQD|1|BQ|A|77
8BQD|1|BQ|U|78
8BQD|1|BQ|U|79
*
8BQD|1|BQ|A|106
8BQD|1|BQ|A|107
8BQD|1|BQ|A|108
8BQD|1|BQ|A|109
8BQD|1|BQ|G|110
*
8BQD|1|BQ|C|321
8BQD|1|BQ|U|322
8BQD|1|BQ|A|323
8BQD|1|BQ|A|324
8BQD|1|BQ|A|325
8BQD|1|BQ|U|326
8BQD|1|BQ|A|327
8BQD|1|BQ|U|328
8BQD|1|BQ|U|329
8BQD|1|BQ|G|330
8BQD|1|BQ|G|331
*
8BQD|1|BS|C|32
8BQD|1|BS|A|33
8BQD|1|BS|U|34
8BQD|1|BS|C|35

Current chains

Chain BQ
25S rRNA
Chain BS
5.8S rRNA

Nearby chains

Chain AC
60S ribosomal protein L36-A
Chain AF
60S ribosomal protein L37-A
Chain AJ
60S ribosomal protein L13-A
Chain AQ
60S ribosomal protein L15-A
Chain BE
RPL4A isoform 1
Chain BP
60S ribosomal protein L35-A

Coloring options:

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