J6_8BR8_001
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GGC*GGCGAC*GGAGGAGAAAC*GGAUU*AGGAG*CUAAAUAC
- Length
- 38 nucleotides
- Bulged bases
- 8BR8|1|LD|G|35, 8BR8|1|Lt|G|24, 8BR8|1|Lt|A|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BR8|1|LD|G|34
8BR8|1|LD|G|35
8BR8|1|LD|C|36
*
8BR8|1|Lt|G|21
8BR8|1|Lt|G|22
8BR8|1|Lt|C|23
8BR8|1|Lt|G|24
8BR8|1|Lt|A|25
8BR8|1|Lt|C|26
*
8BR8|1|Lt|G|57
8BR8|1|Lt|G|58
8BR8|1|Lt|A|59
8BR8|1|Lt|G|60
8BR8|1|Lt|G|61
8BR8|1|Lt|A|62
8BR8|1|Lt|G|63
8BR8|1|Lt|A|64
8BR8|1|Lt|A|65
8BR8|1|Lt|A|66
8BR8|1|Lt|C|67
*
8BR8|1|Lt|G|74
8BR8|1|Lt|G|75
8BR8|1|Lt|A|76
8BR8|1|Lt|U|77
8BR8|1|Lt|U|78
*
8BR8|1|Lt|A|104
8BR8|1|Lt|G|105
8BR8|1|Lt|G|106
8BR8|1|Lt|A|107
8BR8|1|Lt|G|108
*
8BR8|1|Lt|C|273
8BR8|1|Lt|U|274
8BR8|1|Lt|A|275
8BR8|1|Lt|A|276
8BR8|1|Lt|A|277
8BR8|1|Lt|U|278
8BR8|1|Lt|A|279
8BR8|1|Lt|C|280
Current chains
- Chain LD
- 5.8S rRNA
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LM
- 60S ribosomal protein L13
- Chain LO
- Ribosomal protein L15
- Chain Li
- Ribosomal protein L29
- Chain Lk
- Ribosomal protein L37
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