J6_8C94_001

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGAAC*GAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

35 nucleotides

Bulged bases

8C94|1|A|A|223, 8C94|1|A|A|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C94|1|A|G|45
8C94|1|A|G|46
*
8C94|1|A|C|179
8C94|1|A|G|180
8C94|1|A|A|181
8C94|1|A|A|182
8C94|1|A|C|183
*
8C94|1|A|G|215
8C94|1|A|A|216
8C94|1|A|A|217
8C94|1|A|A|218
8C94|1|A|A|219
8C94|1|A|G|220
8C94|1|A|A|221
8C94|1|A|A|222
8C94|1|A|A|223
8C94|1|A|U|224
*
8C94|1|A|A|231
8C94|1|A|G|232
8C94|1|A|A|233
8C94|1|A|U|234
8C94|1|A|U|235
*
8C94|1|A|A|262
8C94|1|A|G|263
8C94|1|A|C|264
8C94|1|A|A|265
8C94|1|A|G|266
*
8C94|1|A|C|426
8C94|1|A|U|427
8C94|1|A|A|428
8C94|1|A|A|429
8C94|1|A|A|430
8C94|1|A|U|431
8C94|1|A|A|432
8C94|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34