J6_8C97_001

3D structure

PDB id

8C97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.07 Å

Loop

Sequence

GG*CGAAC*GAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

35 nucleotides

Bulged bases

8C97|1|A|A|222, 8C97|1|A|A|223, 8C97|1|A|A|265, 8C97|1|A|A|428, 8C97|1|A|U|431

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C97|1|A|G|45
8C97|1|A|G|46
*
8C97|1|A|C|179
8C97|1|A|G|180
8C97|1|A|A|181
8C97|1|A|A|182
8C97|1|A|C|183
*
8C97|1|A|G|215
8C97|1|A|A|216
8C97|1|A|A|217
8C97|1|A|A|218
8C97|1|A|A|219
8C97|1|A|G|220
8C97|1|A|A|221
8C97|1|A|A|222
8C97|1|A|A|223
8C97|1|A|U|224
*
8C97|1|A|A|231
8C97|1|A|G|232
8C97|1|A|A|233
8C97|1|A|U|234
8C97|1|A|U|235
*
8C97|1|A|A|262
8C97|1|A|G|263
8C97|1|A|C|264
8C97|1|A|A|265
8C97|1|A|G|266
*
8C97|1|A|C|426
8C97|1|A|U|427
8C97|1|A|A|428
8C97|1|A|A|429
8C97|1|A|A|430
8C97|1|A|U|431
8C97|1|A|A|432
8C97|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34