J6_8C9A_001

3D structure

PDB id

8C9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.86 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

8C9A|1|A|A|223, 8C9A|1|A|A|231, 8C9A|1|A|G|232, 8C9A|1|A|A|265

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C9A|1|A|G|45
8C9A|1|A|G|46
*
8C9A|1|A|C|179
8C9A|1|A|G|180
8C9A|1|A|A|181
8C9A|1|A|A|182
8C9A|1|A|C|183
*
8C9A|1|A|G|214
8C9A|1|A|G|215
8C9A|1|A|A|216
8C9A|1|A|A|217
8C9A|1|A|A|218
8C9A|1|A|A|219
8C9A|1|A|G|220
8C9A|1|A|A|221
8C9A|1|A|A|222
8C9A|1|A|A|223
8C9A|1|A|U|224
8C9A|1|A|C|225
*
8C9A|1|A|G|230
8C9A|1|A|A|231
8C9A|1|A|G|232
8C9A|1|A|A|233
8C9A|1|A|U|234
8C9A|1|A|U|235
*
8C9A|1|A|A|262
8C9A|1|A|G|263
8C9A|1|A|C|264
8C9A|1|A|A|265
8C9A|1|A|G|266
*
8C9A|1|A|C|426
8C9A|1|A|U|427
8C9A|1|A|A|428
8C9A|1|A|A|429
8C9A|1|A|A|430
8C9A|1|A|U|431
8C9A|1|A|A|432
8C9A|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34