J6_8C9C_001

3D structure

PDB id

8C9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

GG*CGAACCG*CGAGGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

43 nucleotides

Bulged bases

8C9C|1|A|A|223, 8C9C|1|A|A|265, 8C9C|1|A|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C9C|1|A|G|45
8C9C|1|A|G|46
*
8C9C|1|A|C|179
8C9C|1|A|G|180
8C9C|1|A|A|181
8C9C|1|A|A|182
8C9C|1|A|C|183
8C9C|1|A|C|184
8C9C|1|A|G|185
*
8C9C|1|A|C|211
8C9C|1|A|G|212
8C9C|1|A|A|213
8C9C|1|A|G|214
8C9C|1|A|G|215
8C9C|1|A|A|216
8C9C|1|A|A|217
8C9C|1|A|A|218
8C9C|1|A|A|219
8C9C|1|A|G|220
8C9C|1|A|A|221
8C9C|1|A|A|222
8C9C|1|A|A|223
8C9C|1|A|U|224
8C9C|1|A|C|225
*
8C9C|1|A|G|230
8C9C|1|A|A|231
8C9C|1|A|G|232
8C9C|1|A|A|233
8C9C|1|A|U|234
8C9C|1|A|U|235
*
8C9C|1|A|A|262
8C9C|1|A|G|263
8C9C|1|A|C|264
8C9C|1|A|A|265
8C9C|1|A|G|266
*
8C9C|1|A|C|426
8C9C|1|A|U|427
8C9C|1|A|A|428
8C9C|1|A|A|429
8C9C|1|A|A|430
8C9C|1|A|U|431
8C9C|1|A|A|432
8C9C|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains