Loop J6_8CKU

3D structure

PDB id: 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
Description: Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 8CKU|1|AA|A|67, 8CKU|1|AA|U|329, 8CKU|1|CC|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8CKU|1|AA|G|22
8CKU|1|AA|A|23
8CKU|1|AA|G|24
8CKU|1|AA|U|25
8CKU|1|AA|A|26
8CKU|1|AA|C|27
*
8CKU|1|AA|G|58
8CKU|1|AA|G|59
8CKU|1|AA|A|60
8CKU|1|AA|A|61
8CKU|1|AA|A|62
8CKU|1|AA|A|63
8CKU|1|AA|G|64
8CKU|1|AA|A|65
8CKU|1|AA|A|66
8CKU|1|AA|A|67
8CKU|1|AA|C|68
*
8CKU|1|AA|G|75
8CKU|1|AA|G|76
8CKU|1|AA|A|77
8CKU|1|AA|U|78
8CKU|1|AA|U|79
*
8CKU|1|AA|A|106
8CKU|1|AA|A|107
8CKU|1|AA|A|108
8CKU|1|AA|A|109
8CKU|1|AA|G|110
*
8CKU|1|AA|C|321
8CKU|1|AA|U|322
8CKU|1|AA|A|323
8CKU|1|AA|A|324
8CKU|1|AA|A|325
8CKU|1|AA|U|326
8CKU|1|AA|A|327
8CKU|1|AA|U|328
8CKU|1|AA|U|329
8CKU|1|AA|G|330
8CKU|1|AA|G|331
*
8CKU|1|CC|C|32
8CKU|1|CC|A|33
8CKU|1|CC|U|34
8CKU|1|CC|C|35

Current chains

Chain AA: 25S ribosomal RNA
Chain CC: 5.8S ribosomal RNA

Nearby chains

Chain GG: 60S ribosomal protein L4-A
Chain OO: 60S ribosomal protein L13-A
Chain QQ: 60S ribosomal protein L15-A
Chain T: 60S ribosomal protein L35-A
Chain U: 60S ribosomal protein L36-A
Chain V: 60S ribosomal protein L37-A

J6_8CKU_001