J6_8CVM_001

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GC*GUAAC*GGAAGAGAAAA*UGAUU*AGGAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8CVM|1|a|A|230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|G|44
8CVM|1|a|C|45
*
8CVM|1|a|G|186
8CVM|1|a|U|187
8CVM|1|a|A|188
8CVM|1|a|A|189
8CVM|1|a|C|190
*
8CVM|1|a|G|221
8CVM|1|a|G|222
8CVM|1|a|A|223
8CVM|1|a|A|224
8CVM|1|a|G|225
8CVM|1|a|A|226
8CVM|1|a|G|227
8CVM|1|a|A|228
8CVM|1|a|A|229
8CVM|1|a|A|230
8CVM|1|a|A|231
*
8CVM|1|a|U|238
8CVM|1|a|G|239
8CVM|1|a|A|240
8CVM|1|a|U|241
8CVM|1|a|U|242
*
8CVM|1|a|A|269
8CVM|1|a|G|270
8CVM|1|a|G|271
8CVM|1|a|A|272
8CVM|1|a|G|273
*
8CVM|1|a|C|515
8CVM|1|a|U|516
8CVM|1|a|A|517
8CVM|1|a|A|518
8CVM|1|a|A|519
8CVM|1|a|U|520
8CVM|1|a|A|521
8CVM|1|a|C|522

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34